Does any one know that if we can use MySql enterprise edition with Magento community edition?
If yes, are there any benefits of using MySql enterprise instead of MySql community version?
You can use either of the MySQL products for your Magento installation. The MySQL version doesn't matter to Magento.
However for Magento I'd highly recommend using another flavor of MySQL such as Percona as you'll see improved performance over standard MySQL. https://www.percona.com/software/percona-server/ps-5.6
Someone else has asked a question about the best MySQL alternative Which MySQL Server provides a better performance for Magento