I have been looking a way to get all the layered navigation filters available, i dont know if this is per category or if i cant get all of them, because i need them on the admin side to choose in each category which ones i want to use, but currently i have been just able to get them in the front end when a category is selected by this line:
$appliedFilters = Mage::getSingleton('Mage_Catalog_Block_Layer_State')->getActiveFilters();