At first, your payment method should be available for usage in Admin panel and you need to specify can_use_internal
property in your payment method YourCustomPayment/etc/config.xml
file:
<payment>
<your_custom_payment_method_code>
<model>YourCustomPaymentMethodFacade</model>
...
<can_use_internal>1</can_use_internal>
</your_custom_payment_method_code>
</payment>
On the next step, you need to create block class, depends on your integration it will extend \Magento\Payment\Block\Form\Cc
or \Magento\Payment\Block\Form
.
And, after block is created, you need to create template view for this block and specify it in the layout for billing form (YourPayment/view/adminhtml/layout/sales_order_create_index.xml
):
<body>
<referenceBlock name="order_create_billing_form">
<action method="setMethodFormTemplate">
<argument name="method" xsi:type="string">your_custom_payment_method_code</argument>
<argument name="template" xsi:type="string">Magento_YourCustomPayment::form/cc.phtml</argument>
</action>
</referenceBlock>
</body>
And for YourPayment/view/adminhtml/layout/sales_order_create_load_block_billing_method.xml
<body>
<referenceBlock name="order.create.billing.method.form">
<action method="setMethodFormTemplate">
<argument name="method" xsi:type="string">your_custom_payment_method_code</argument>
<argument name="template" xsi:type="string">Magento_YourCustomPayment::form/cc.phtml</argument>
</action>
</referenceBlock>
</body>
For more details, please, see my answer How to add custom payment gateway extension in magento2.
UPD This and this topics describe how to configure payment method for Adminl panel.