As I'm sure you are aware, there is a new version of Magento 2 (2.0.3 at the time of writing).
I can not follow the update instructions given in the Magento developer docs (using the System Upgrade utility) as my document root points to the pub folder, not the main Magento installation folder. The setup wizard is not in the pub directory for security reasons and the best practice is to use the pub folder as the document root.
The only way I can think of using the setup wizard to upgrade the system is to change the doc root to the main Magento installation folder, upgrade the system, change the doc root back to the pub folder.
Does anyone know of any other work around or a way to upgrade with the setup wizard? I installed Magento via the command line using the compressed package (decompressed and installed via the command line tool)