To add the external js file there is no native function in magento. But you can add the js file through layout by following code
<reference name="head">
<block type="core/text" name="unique-name">
<action method="setText"><text><method="setText">
<text><![CDATA[<script src="//ajax.googleapis.com/ajax/libs/jquery/1.9.0/jquery.min.js"></script>]]></text><text>
</action>
</block>
</reference>